pre-refactor 041426

2026-04-14 19:42:16 +02:00
parent eb9eafe715
commit 13290575d5
75 changed files with 8900 additions and 77 deletions
@@ -0,0 +1,87 @@
+{
+  "_notes": [
+    "Phase 5 — Full HyperTower: bilateral + clinical data + aggregation strategy comparison.",
+    "Goal: show the effect of a dual CNN + clinical data, and compare ensemble vs fused-head.",
+    "Best settings from all prior phases: refugelike, iop_ratio_drop_raw, bcd_p05.",
+    "Best bilateral architecture from phase 4 should be used — update tower-mode accordingly.",
+    "common_args are prepended to every run's args list.",
+    "NOTE: update --tower-mode in groups below once phase 4 winner is known.",
+    "Placeholder uses 'bilateral' — change to 'siamese' if that wins phase 4."
+  ],
+
+  "common_args": [
+    "--eval-mode", "binary",
+    "--bridge-mode", "fused",
+    "--epochs", "30",
+    "--in-memory-cache",
+    "--augment",
+    "--tune-binary-threshold",
+    "--backbone", "refugelike",
+    "--iop-corr-method", "ratio",
+    "--iop-drop-raw",
+    "--exclude-cols", "Axial_Length",
+    "--output-root", "v3/results"
+  ],
+
+  "_common_args_implicit_defaults": {
+    "--tower-loss-mode": "bcd",
+    "--bcd-prob": "0.5",
+    "--warmup-cd-epochs": "40",
+    "--single-warmup-tower-epochs": "3",
+    "--single-warmup-fused-epochs": "3",
+    "--bilat-warmup-tower-epochs": "3",
+    "--bilat-warmup-fused-epochs": "3"
+  },
+
+  "baseline": {
+    "run_name": "phase5/single_fused",
+    "description": "Single-eye + clinical data — phase 3 best config, re-run as direct comparison baseline for phase 5.",
+    "extra_args": ["--tower-mode", "single"]
+  },
+
+  "groups": [
+    {
+      "name": "bilateral_clinical",
+      "description": "Add clinical data to bilateral architectures.",
+      "runs": [
+        {
+          "run_name": "phase5/ensemble_fused",
+          "description": "Ensemble (independent OD+OS) + clinical data via fused bridge.",
+          "extra_args": ["--tower-mode", "ensemble"]
+        },
+        {
+          "run_name": "phase5/bilateral_fused",
+          "description": "BilateralHT + clinical data — full canonical HyperTower.",
+          "extra_args": ["--tower-mode", "bilateral"]
+        },
+        {
+          "run_name": "phase5/siamese_fused",
+          "description": "SiameseHT + clinical data — siamese mean+delta with fused clinical bridge.",
+          "extra_args": ["--tower-mode", "siamese"]
+        }
+      ]
+    },
+
+    {
+      "name": "aggregation",
+      "description": "Compare patient-level prediction aggregation strategies on top of ensemble.",
+      "runs": [
+        {
+          "run_name": "phase5/ensemble_fused_head",
+          "description": "Ensemble + clinical data + attention scorer head (Linear(C→1) per eye, softmax-weighted average).",
+          "extra_args": ["--tower-mode", "ensemble", "--fused-head"]
+        },
+        {
+          "run_name": "phase5/logit_mlp_head",
+          "description": "Ensemble + clinical data + logit-level MLP head (cat([logit_od, logit_os]) → FC(64) → FC(C)).",
+          "extra_args": ["--tower-mode", "ensemble", "--fused-head", "--head-type", "logit_mlp"]
+        },
+        {
+          "run_name": "phase5/embedding_mlp_head",
+          "description": "Ensemble + clinical data + embedding-level MLP head (cat([z_od, z_os]) → FC(256) → FC(C)).",
+          "extra_args": ["--tower-mode", "ensemble", "--fused-head", "--head-type", "embedding_mlp"]
+        }
+      ]
+    }
+  ]
+}