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added better memory caching, multithreaded processing, cleanup scripts dir

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rpotter6298
2026-03-13 08:08:36 +01:00
parent 8282461a23
commit 7ea85d5426
39 changed files with 1850 additions and 1998 deletions
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scripts/main/pipeline.ipynb
+3 -3
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@@ -1287,7 +1287,7 @@
"outputs": [],
"source": [
"# 3a) No crop — original full-size images\n",
"!python scripts/basic_analysis/compare_hypertower_modes.py \\\n",
"!python scripts/main/v2/multirun_hypertower.py \\\n",
" --tower-modes single ensemble \\\n",
" --eval-modes binary multiclass \\\n",
" --epochs 40 --n-splits 5 \\\n",
@@ -1305,7 +1305,7 @@
"outputs": [],
"source": [
"# 3b) GT crop — expert segmentation masks crop the optic disc region\n",
"!python scripts/basic_analysis/compare_hypertower_modes.py \\\n",
"!python scripts/main/v2/multirun_hypertower.py \\\n",
" --tower-modes single ensemble \\\n",
" --eval-modes binary multiclass \\\n",
" --epochs 40 --n-splits 5 \\\n",
@@ -1323,7 +1323,7 @@
"outputs": [],
"source": [
"# 3c) UNet crop — trained segmenter crops the optic disc region\n",
"!python scripts/basic_analysis/compare_hypertower_modes.py \\\n",
"!python scripts/main/v2/multirun_hypertower.py \\\n",
" --tower-modes single ensemble \\\n",
" --eval-modes binary multiclass \\\n",
" --epochs 40 --n-splits 5 \\\n",