Refactor geometry feature loaders and enhance distributed client status reporting

- Updated GTGeometryLoader to streamline geometry vector computation and caching.
- Introduced UNetGeometryLoader for UNet-derived geometry vectors.
- Added sample collection method in PapilaBundle for better data handling.
- Refined GeometrySegEncoder and ImageEncoder to utilize new sample collection.
- Enhanced distributed client with heartbeat mechanism for improved job tracking.
- Added new configuration files for UNet-derived geometry integration.
This commit is contained in:
rpotter6298
2026-04-29 11:05:19 +02:00
parent 512ebd13b2
commit af813bbb62
11 changed files with 467 additions and 153 deletions
+5 -19
View File
@@ -126,16 +126,14 @@ class GeometrySegEncoder(TowerBase):
# ── EPC early_pass ───────────────────────────────────────────────────────
def early_pass(self, context) -> None:
data = context.require("data")
split = context.require("split")
data = context.require("data")
split = context.require("split")
train_samples = self._collect_samples(split.train, data)
all_samples = self._collect_samples(split.train, data)
all_samples += self._collect_samples(split.val, data)
train_samples = data.collect_samples(split.train)
all_samples = train_samples + data.collect_samples(split.val)
if split.test is not None:
all_samples += self._collect_samples(split.test, data)
all_samples += data.collect_samples(split.test)
# Reset per-fold state if loader supports it (UNet only).
if hasattr(self._loader, "reset_cache"):
self._loader.reset_cache()
if hasattr(self._loader, "reset_weights"):
@@ -172,18 +170,6 @@ class GeometrySegEncoder(TowerBase):
# ── Internals ────────────────────────────────────────────────────────────
def _collect_samples(self, df, data) -> list:
"""Build (pid, eye, image_path) tuples from a split DataFrame."""
if df is None or len(df) == 0:
return []
pc = data.patient_col
out = []
for _, row in df.iterrows():
pid = int(row[pc])
eye = str(row.get("eyeID", "OD"))
out.append((pid, eye, data.image.get_image_path(pid, eye)))
return out
@staticmethod
def _augment_array(arr: np.ndarray) -> np.ndarray:
"""Random flip + 90° rotation on a (C, H, W) seg-map array."""