rpotter6298
1100 lines
51 KiB
Python
1100 lines
51 KiB
Python
"""V2HyperTower — central orchestrator for the V2 mode-comparison pipeline.
|
||
|
||
All model classes, metric helpers, croppers and data utilities live in their
|
||
respective category-specific modules. This file owns only:
|
||
- V2HyperTower (the big-picture orchestrator)
|
||
- V2ModeComparator (thin backward-compat shim)
|
||
- module-level ``build_parser`` alias (used by old scripts that import it
|
||
directly; will be removed once all callers are updated)
|
||
"""
|
||
from __future__ import annotations
|
||
|
||
import argparse
|
||
import copy
|
||
import csv
|
||
import json
|
||
import time
|
||
from pathlib import Path
|
||
from types import SimpleNamespace
|
||
from typing import Optional
|
||
|
||
import numpy as np
|
||
import torch
|
||
|
||
from classes.v2.croppers import build_image_preprocessor_from_args
|
||
from classes.v2.dataset import _ClinicalView # noqa: F401 (re-exported for compat)
|
||
from classes.v2.loader_factory import (
|
||
filter_bilateral_samples,
|
||
filter_eye_samples,
|
||
make_loader,
|
||
)
|
||
from classes.v2.metrics import _score_arrays, _svf, _tune_and_snap
|
||
from classes.v2.models import (
|
||
BilateralHT,
|
||
SingleEyeHT,
|
||
V2ModeComparisonOps,
|
||
collect_probs_bilateral,
|
||
collect_probs_bilateral_components,
|
||
collect_probs_classic,
|
||
collect_probs_ensemble,
|
||
collect_probs_single_components,
|
||
train_bilateral_epoch,
|
||
train_single_epoch,
|
||
)
|
||
from classes.v2.papila_builders import build_papila_data
|
||
from classes.v2.profiles import build_papila_profile
|
||
from classes.v2.results import FoldArtifacts, FoldResult, _f, _nan, _sv
|
||
from classes.v2.split_manager import PatientFirstSplitManager
|
||
from classes.v2.transforms import build_eval_transform
|
||
from classes.v2.utils import (
|
||
_drop_mixed_label_patients,
|
||
_relabel_mixed_patients_to_max,
|
||
choose_device,
|
||
seed_everything,
|
||
)
|
||
from classes.v2.hypertower_logger import HypertowerLogger
|
||
|
||
|
||
# ---------------------------------------------------------------------------
|
||
# V2HyperTower
|
||
# ---------------------------------------------------------------------------
|
||
|
||
class V2HyperTower:
|
||
"""Central orchestrator. Construct with ``V2HyperTower(args)``, call ``.run()``."""
|
||
|
||
# ------------------------------------------------------------------
|
||
# CLI
|
||
# ------------------------------------------------------------------
|
||
|
||
@staticmethod
|
||
def build_parser() -> argparse.ArgumentParser:
|
||
ap = argparse.ArgumentParser(
|
||
description=(
|
||
"Three HyperTower modes: Classic (eye-level), Ensemble (patient-level avg), "
|
||
"Bilateral (BilateralBridge with shared towers). Pure k-fold CV."
|
||
)
|
||
)
|
||
ap.add_argument("--image-dir", default="Papila/FundusImages")
|
||
ap.add_argument("--clinical-dir", default="Papila/ClinicalData")
|
||
ap.add_argument("--label-col", default="Diagnosis")
|
||
ap.add_argument("--cat-cols", nargs="*", default=["Gender", "Phakic/Pseudophakic"])
|
||
ap.add_argument("--eval-mode", choices=["binary", "multiclass"], default="multiclass")
|
||
ap.add_argument(
|
||
"--tower-mode", choices=["single", "ensemble", "bilateral", "classic"],
|
||
default="single",
|
||
help="Train/evaluate a single tower mode.",
|
||
)
|
||
ap.add_argument("--n-splits", type=int, default=5)
|
||
ap.add_argument("--fold-seed", type=int, default=42)
|
||
ap.add_argument("--holdout-per-class", type=int, default=5,
|
||
help="Patients per class reserved for holdout before train/test split (0 disables)")
|
||
ap.add_argument("--holdout-seed", type=int, default=123,
|
||
help="Random seed for holdout sampling")
|
||
ap.add_argument(
|
||
"--folds", type=int, default=None,
|
||
help="Optional cap on how many folds to run (default: all --n-splits).",
|
||
)
|
||
ap.add_argument("--epochs", type=int, default=40)
|
||
ap.add_argument(
|
||
"--warmup-tower-epochs", type=int, default=None,
|
||
help="Extra tower warmup epochs (added before main epochs). Default: auto by mode.",
|
||
)
|
||
ap.add_argument(
|
||
"--warmup-fused-epochs", type=int, default=None,
|
||
help="Extra fused warmup epochs (added before main epochs). Default: auto by mode.",
|
||
)
|
||
ap.add_argument("--single-warmup-tower-epochs", type=int, default=None,
|
||
help="Single-eye model tower warmup (overrides --warmup-tower-epochs).")
|
||
ap.add_argument("--single-warmup-fused-epochs", type=int, default=None,
|
||
help="Single-eye model fused warmup (overrides --warmup-fused-epochs).")
|
||
ap.add_argument("--bilat-warmup-tower-epochs", type=int, default=None,
|
||
help="Bilateral model tower warmup (overrides --warmup-tower-epochs).")
|
||
ap.add_argument("--bilat-warmup-fused-epochs", type=int, default=None,
|
||
help="Bilateral model fused warmup (overrides --warmup-fused-epochs).")
|
||
ap.add_argument("--batch-size", type=int, default=8)
|
||
ap.add_argument("--lr", type=float, default=1e-4)
|
||
ap.add_argument("--bcd-prob", type=float, default=0.5,
|
||
help="Tower-only step probability during main phase (per model).")
|
||
ap.add_argument("--backbone", default="refugelike")
|
||
ap.add_argument("--freeze-ratio", type=float, default=0.0)
|
||
ap.add_argument("--augment", action="store_true")
|
||
ap.add_argument("--num-workers", type=int, default=0)
|
||
ap.add_argument("--device", choices=["auto", "cpu", "cuda"], default="auto")
|
||
ap.add_argument("--seed", type=int, default=1234)
|
||
ap.add_argument("--run-name", default=None)
|
||
ap.add_argument("--output-root", default="analysis_data")
|
||
# Optional ROI cropping
|
||
ap.add_argument("--img-crop-manifest", type=str, default=None,
|
||
help="Path to crop manifest CSV for ROI cropping.")
|
||
ap.add_argument("--img-crop-gt", action="store_true",
|
||
help="Use ground-truth masks/contours from manifest for ROI crop.")
|
||
ap.add_argument("--img-crop-weights", type=str, default=None,
|
||
help="UNet weights path for ROI cropping from predicted masks.")
|
||
ap.add_argument("--img-crop-normalize", type=str, default="per_image",
|
||
choices=["per_image", "imagenet"],
|
||
help="UNet input normalization mode.")
|
||
ap.add_argument("--img-crop-threshold", type=float, default=0.5,
|
||
help="UNet mask threshold for ROI extraction.")
|
||
ap.add_argument("--img-crop-tta", action="store_true",
|
||
help="Enable flip-TTA during UNet mask inference.")
|
||
ap.add_argument("--img-crop-scale", type=float, default=2.5,
|
||
help="Disc-radius multiplier for square crop.")
|
||
ap.add_argument("--img-crop-size", type=int, default=224,
|
||
help="Output ROI size before tower transforms.")
|
||
ap.add_argument("--img-crop-cache", type=str, default="cache_data/hypertower_crops",
|
||
help="Cache directory for cropped images and geometry sidecars.")
|
||
ap.add_argument("--persist-img-crop-cache", action="store_true",
|
||
help="Keep existing cached crop .npz files instead of clearing at run start.")
|
||
# Architecture
|
||
ap.add_argument("--md-hidden-dim", type=int, default=128,
|
||
help="MDTower hidden dimension.")
|
||
ap.add_argument("--fusion-dim", type=int, default=256,
|
||
help="Bridge/BilateralBridge fusion dimension.")
|
||
# Mixed patients
|
||
ap.add_argument(
|
||
"--exclude-mixed-patients",
|
||
dest="exclude_mixed_patients", action="store_true",
|
||
help="Drop patients whose two eyes have different labels before splitting.",
|
||
)
|
||
ap.add_argument(
|
||
"--include-mixed-patients",
|
||
dest="exclude_mixed_patients", action="store_false",
|
||
)
|
||
ap.add_argument(
|
||
"--relabel-mixed-patients-to-max",
|
||
dest="relabel_mixed_patients_to_max",
|
||
action="store_true",
|
||
help="When mixed patients are included, relabel both eyes to patient max severity.",
|
||
)
|
||
ap.add_argument(
|
||
"--keep-mixed-raw-labels",
|
||
dest="relabel_mixed_patients_to_max",
|
||
action="store_false",
|
||
help=argparse.SUPPRESS,
|
||
)
|
||
ap.set_defaults(exclude_mixed_patients=False, relabel_mixed_patients_to_max=False)
|
||
# Tuning
|
||
ap.add_argument(
|
||
"--tune-binary-threshold", action="store_true",
|
||
help="Tune per-model binary threshold on validation each epoch.",
|
||
)
|
||
ap.add_argument(
|
||
"--tune-multiclass-bias", action="store_true",
|
||
help="Tune per-model multiclass log-prob bias on validation each epoch.",
|
||
)
|
||
ap.add_argument("--ece-bins", type=int, default=10)
|
||
ap.add_argument("--log-every", type=int, default=1)
|
||
ap.add_argument("--save-checkpoints", action=argparse.BooleanOptionalAction, default=True,
|
||
help="Save best_single.pt / best_holdout_single.pt per fold (use --no-save-checkpoints to disable)")
|
||
return ap
|
||
|
||
# ------------------------------------------------------------------
|
||
# Construction
|
||
# ------------------------------------------------------------------
|
||
|
||
def __init__(self, args) -> None:
|
||
self.args = args
|
||
self.device = choose_device(args.device)
|
||
seed_everything(args.seed)
|
||
|
||
print(f"Device: {self.device}", flush=True)
|
||
print("Loading PAPILA data...", flush=True)
|
||
self.data = build_papila_data(
|
||
image_dir=args.image_dir,
|
||
clinical_dir=args.clinical_dir,
|
||
label_col=args.label_col,
|
||
cat_cols=list(args.cat_cols),
|
||
n_splits=args.n_splits,
|
||
random_seed=args.fold_seed,
|
||
)
|
||
print(f"Loaded: {len(self.data.df)} rows feature_dim={self.data.feature_dim}", flush=True)
|
||
self.image_preprocessor = build_image_preprocessor_from_args(args)
|
||
self.profile_eye = build_papila_profile(
|
||
patient_col="Patient ID", label_col=args.label_col, sample_mode="eye"
|
||
)
|
||
self.profile_patient = build_papila_profile(
|
||
patient_col="Patient ID", label_col=args.label_col, sample_mode="patient"
|
||
)
|
||
|
||
# ------------------------------------------------------------------
|
||
# Orchestration
|
||
# ------------------------------------------------------------------
|
||
|
||
def run(self) -> Path:
|
||
"""Execute the full fold loop for one eval_mode × tower_mode combination."""
|
||
args = self.args
|
||
ts = time.strftime("%Y%m%d_%H%M%S")
|
||
run_name = args.run_name or f"hypertower_modes_{ts}"
|
||
out_dir = Path(args.output_root) / run_name
|
||
out_dir.mkdir(parents=True, exist_ok=True)
|
||
|
||
mode = args.eval_mode
|
||
tower_mode = "single" if args.tower_mode == "classic" else args.tower_mode
|
||
df_mode = self.data.df.copy()
|
||
|
||
if args.exclude_mixed_patients:
|
||
before = df_mode["Patient ID"].nunique()
|
||
df_mode, mixed = _drop_mixed_label_patients(
|
||
df_mode, patient_col="Patient ID", label_col=args.label_col
|
||
)
|
||
print(
|
||
f"[{mode}] dropped {len(mixed)} mixed-label patients "
|
||
f"({before} → {df_mode['Patient ID'].nunique()})",
|
||
flush=True,
|
||
)
|
||
else:
|
||
if args.relabel_mixed_patients_to_max:
|
||
before_rows = len(df_mode)
|
||
df_mode, changed_rows, still_mixed = _relabel_mixed_patients_to_max(
|
||
df_mode, patient_col="Patient ID", label_col=args.label_col
|
||
)
|
||
print(
|
||
f"[{mode}] relabeled mixed patients to max severity "
|
||
f"(changed={changed_rows}, rows={before_rows}→{len(df_mode)}, "
|
||
f"remaining_mixed={len(still_mixed)}).",
|
||
flush=True,
|
||
)
|
||
else:
|
||
print(f"[{mode}] keeping mixed-label patients with raw per-eye labels.", flush=True)
|
||
|
||
if mode == "binary":
|
||
df_mode = df_mode[df_mode[args.label_col].isin([0, 1])].reset_index(drop=True)
|
||
|
||
num_classes = 2 if mode == "binary" else int(df_mode[args.label_col].nunique())
|
||
print(
|
||
f"\n[{mode}] num_classes={num_classes} rows={len(df_mode)} "
|
||
f"patients={df_mode['Patient ID'].nunique()}",
|
||
flush=True,
|
||
)
|
||
|
||
split_manager = PatientFirstSplitManager(
|
||
patient_col="Patient ID", label_col=args.label_col
|
||
)
|
||
split_args = SimpleNamespace(
|
||
eval_mode=mode,
|
||
holdout_per_class=args.holdout_per_class,
|
||
holdout_seed=args.holdout_seed,
|
||
n_splits=args.n_splits,
|
||
fold_seed=args.fold_seed,
|
||
)
|
||
clinical_ns = SimpleNamespace(df=df_mode, label_col=args.label_col)
|
||
plans = split_manager.build_plans(clinical=clinical_ns, args=split_args, profile=None)
|
||
requested_folds = args.n_splits if args.folds is None else int(args.folds)
|
||
n_folds = min(requested_folds, len(plans))
|
||
|
||
tm_dir = out_dir / mode / tower_mode
|
||
tm_dir.mkdir(parents=True, exist_ok=True)
|
||
fold_results: list[FoldResult] = []
|
||
|
||
# Override profiles with df_mode slice.
|
||
profile_eye = build_papila_profile(
|
||
patient_col="Patient ID", label_col=args.label_col, sample_mode="eye"
|
||
)
|
||
profile_patient = build_papila_profile(
|
||
patient_col="Patient ID", label_col=args.label_col, sample_mode="patient"
|
||
)
|
||
|
||
for fold in range(n_folds):
|
||
seed_everything(args.seed + fold * 100)
|
||
fold_dir = tm_dir / f"fold{fold}"
|
||
fold_dir.mkdir(exist_ok=True)
|
||
|
||
print(f"\n[{mode}:{tower_mode}] fold {fold+1}/{n_folds}", flush=True)
|
||
result, artifacts = self._run_fold(
|
||
fold=fold,
|
||
split=plans[fold],
|
||
mode=mode,
|
||
data=self.data,
|
||
num_classes=num_classes,
|
||
profile_eye=profile_eye,
|
||
profile_patient=profile_patient,
|
||
fold_dir=fold_dir,
|
||
tower_mode=tower_mode,
|
||
)
|
||
fold_results.append(result)
|
||
if artifacts.y_true_ensemble is not None:
|
||
np.save(fold_dir / "y_true.npy", artifacts.y_true_ensemble)
|
||
if artifacts.probs_ensemble is not None:
|
||
np.save(fold_dir / "probs_fused.npy", artifacts.probs_ensemble)
|
||
if artifacts.probs_classic is not None:
|
||
np.save(fold_dir / "probs_classic.npy", artifacts.probs_classic)
|
||
if artifacts.probs_bilat is not None:
|
||
np.save(fold_dir / "probs_bilat.npy", artifacts.probs_bilat)
|
||
|
||
fold_csv = tm_dir / "fold_results.csv"
|
||
csv_fields = list(FoldResult.__dataclass_fields__.keys())
|
||
with fold_csv.open("w", newline="", encoding="utf-8") as fh:
|
||
w = csv.DictWriter(fh, fieldnames=csv_fields)
|
||
w.writeheader()
|
||
for r in fold_results:
|
||
w.writerow({k: getattr(r, k) for k in csv_fields})
|
||
|
||
summary = self._summary(fold_results)
|
||
self._print_summary(f"{mode}:{tower_mode}", summary, tower_mode=tower_mode)
|
||
metric_key = {
|
||
"single": "classic_val_auc",
|
||
"ensemble": "ensemble_val_auc",
|
||
"bilateral": "bilat_val_auc",
|
||
}[tower_mode]
|
||
fold_metrics = []
|
||
best_vals = []
|
||
for r in fold_results:
|
||
best_val = getattr(r, metric_key)
|
||
fold_metrics.append({
|
||
"fold": r.fold,
|
||
"best_metric_value": _f(best_val),
|
||
"best_epoch": (r.best_epoch_bilat if tower_mode == "bilateral" else r.best_epoch_single),
|
||
"monitor": metric_key,
|
||
})
|
||
if not np.isnan(float(best_val)):
|
||
best_vals.append(float(best_val))
|
||
|
||
ts_now = time.strftime("%Y%m%d_%H%M%S")
|
||
mode_summary = {
|
||
"run_id": run_name,
|
||
"backbone": args.backbone,
|
||
"epochs": args.epochs,
|
||
"warmup_tower_epochs": args.warmup_tower_epochs,
|
||
"warmup_fused_epochs": args.warmup_fused_epochs,
|
||
"single_warmup_tower_epochs": args.single_warmup_tower_epochs,
|
||
"single_warmup_fused_epochs": args.single_warmup_fused_epochs,
|
||
"bilat_warmup_tower_epochs": args.bilat_warmup_tower_epochs,
|
||
"bilat_warmup_fused_epochs": args.bilat_warmup_fused_epochs,
|
||
"batch_size": args.batch_size,
|
||
"lr": args.lr,
|
||
"eval_mode": mode,
|
||
"tower_mode": tower_mode,
|
||
"n_splits": n_folds,
|
||
"best_metric": metric_key,
|
||
"best_metric_mode": "max",
|
||
"best_metric_mean": (float(np.mean(best_vals)) if best_vals else None),
|
||
"best_metric_std": (float(np.std(best_vals)) if best_vals else None),
|
||
"fold_metrics": fold_metrics,
|
||
"mode_summary": summary,
|
||
}
|
||
(tm_dir / "summary.json").write_text(json.dumps(mode_summary, indent=2), encoding="utf-8")
|
||
|
||
root_summary_path = out_dir / "summary.json"
|
||
if root_summary_path.exists():
|
||
try:
|
||
payload = json.loads(root_summary_path.read_text(encoding="utf-8"))
|
||
except Exception:
|
||
payload = {}
|
||
else:
|
||
payload = {}
|
||
payload.setdefault("run_name", run_name)
|
||
payload.setdefault("timestamp", ts_now)
|
||
payload["config"] = vars(args)
|
||
payload.setdefault("summaries", {})
|
||
payload["summaries"][f"{mode}:{tower_mode}"] = summary
|
||
root_summary_path.write_text(json.dumps(payload, indent=2), encoding="utf-8")
|
||
|
||
print(f"\nOutputs written to: {out_dir}")
|
||
return out_dir
|
||
|
||
# ------------------------------------------------------------------
|
||
# Fold runner
|
||
# ------------------------------------------------------------------
|
||
|
||
def _run_fold(
|
||
self,
|
||
fold: int,
|
||
split,
|
||
mode: str,
|
||
data,
|
||
num_classes: int,
|
||
profile_eye,
|
||
profile_patient,
|
||
fold_dir: Path,
|
||
tower_mode: str,
|
||
) -> tuple[FoldResult, FoldArtifacts]:
|
||
args = self.args
|
||
device = self.device
|
||
image_preprocessor = self.image_preprocessor
|
||
nan = _nan()
|
||
tower_mode = "single" if tower_mode == "classic" else tower_mode
|
||
run_single = tower_mode in ("single", "ensemble")
|
||
run_bilat = tower_mode == "bilateral"
|
||
|
||
global_warmup_tower = getattr(args, "warmup_tower_epochs", None)
|
||
global_warmup_fused = getattr(args, "warmup_fused_epochs", None)
|
||
single_warmup_tower = (
|
||
int(args.single_warmup_tower_epochs)
|
||
if getattr(args, "single_warmup_tower_epochs", None) is not None
|
||
else int(global_warmup_tower) if global_warmup_tower is not None else 2
|
||
)
|
||
single_warmup_fused = (
|
||
int(args.single_warmup_fused_epochs)
|
||
if getattr(args, "single_warmup_fused_epochs", None) is not None
|
||
else int(global_warmup_fused) if global_warmup_fused is not None else 2
|
||
)
|
||
bilat_warmup_tower = (
|
||
int(args.bilat_warmup_tower_epochs)
|
||
if getattr(args, "bilat_warmup_tower_epochs", None) is not None
|
||
else int(global_warmup_tower) if global_warmup_tower is not None else 4
|
||
)
|
||
bilat_warmup_fused = (
|
||
int(args.bilat_warmup_fused_epochs)
|
||
if getattr(args, "bilat_warmup_fused_epochs", None) is not None
|
||
else int(global_warmup_fused) if global_warmup_fused is not None else 3
|
||
)
|
||
if not run_single:
|
||
single_warmup_tower = 0
|
||
single_warmup_fused = 0
|
||
if not run_bilat:
|
||
bilat_warmup_tower = 0
|
||
bilat_warmup_fused = 0
|
||
main_epochs = int(args.epochs)
|
||
total_single_epochs = (single_warmup_tower + single_warmup_fused + main_epochs) if run_single else 0
|
||
total_bilat_epochs = (bilat_warmup_tower + bilat_warmup_fused + main_epochs) if run_bilat else 0
|
||
total_epochs = max(total_single_epochs, total_bilat_epochs)
|
||
|
||
# ---- samples ---------------------------------------------------
|
||
eye_train = filter_eye_samples(profile_eye.build_samples(df=split.train, clinical=data))
|
||
bilat_train = filter_bilateral_samples(profile_patient.build_samples(df=split.train, clinical=data))
|
||
bilat_val = filter_bilateral_samples(profile_patient.build_samples(df=split.val, clinical=data))
|
||
|
||
if len(bilat_val) == 0:
|
||
print(f" [fold {fold+1}] WARNING: no bilateral val samples; skipping fold.", flush=True)
|
||
empty = FoldResult(
|
||
mode=mode, fold=fold,
|
||
best_epoch_single=0, best_epoch_bilat=0,
|
||
classic_val_auc=nan, classic_val_acc=nan, classic_val_kappa=nan,
|
||
classic_val_mcc=nan, classic_val_f1=nan, classic_val_recall=None,
|
||
classic_val_ece=nan, classic_val_threshold=nan, classic_val_bias=None,
|
||
classic_val_n=0,
|
||
ensemble_val_auc=nan, ensemble_val_acc=nan, ensemble_val_kappa=nan,
|
||
ensemble_val_mcc=nan, ensemble_val_f1=nan, ensemble_val_recall=None,
|
||
ensemble_val_ece=nan, ensemble_val_threshold=nan, ensemble_val_bias=None,
|
||
ensemble_val_n=0,
|
||
bilat_val_auc=nan, bilat_val_acc=nan, bilat_val_kappa=nan,
|
||
bilat_val_mcc=nan, bilat_val_f1=nan, bilat_val_recall=None,
|
||
bilat_val_ece=nan, bilat_val_threshold=nan, bilat_val_bias=None,
|
||
bilat_val_n=0,
|
||
classic_holdout_auc=nan, classic_holdout_acc=nan,
|
||
ensemble_holdout_auc=nan, ensemble_holdout_acc=nan,
|
||
bilat_holdout_auc=nan, bilat_holdout_acc=nan,
|
||
holdout_n=0,
|
||
single_train_n=len(eye_train), bilat_train_n=len(bilat_train),
|
||
)
|
||
return empty, FoldArtifacts(
|
||
y_true_classic=None, probs_classic=None,
|
||
y_true_ensemble=None, probs_ensemble=None,
|
||
y_true_bilat=None, probs_bilat=None,
|
||
)
|
||
|
||
# ---- models ----------------------------------------------------
|
||
single = None
|
||
bilateral = None
|
||
if run_single:
|
||
single = SingleEyeHT(
|
||
backbone=args.backbone, freeze_ratio=args.freeze_ratio,
|
||
augment=args.augment, clinical_data=data,
|
||
num_classes=num_classes,
|
||
md_hidden_dim=args.md_hidden_dim, fusion_dim=args.fusion_dim,
|
||
).to(device)
|
||
if run_bilat:
|
||
bilateral = BilateralHT(
|
||
backbone=args.backbone, freeze_ratio=args.freeze_ratio,
|
||
augment=args.augment, clinical_data=data,
|
||
num_classes=num_classes,
|
||
md_hidden_dim=args.md_hidden_dim, fusion_dim=args.fusion_dim,
|
||
).to(device)
|
||
|
||
slots_eye = profile_eye.slot_descriptors()
|
||
slots_patient = profile_patient.slot_descriptors()
|
||
loader_kw = dict(batch_size=args.batch_size, num_workers=args.num_workers)
|
||
|
||
# ---- loaders ---------------------------------------------------
|
||
train_single_loader = None
|
||
train_bilat_loader = None
|
||
if run_single:
|
||
train_single_loader = make_loader(
|
||
eye_train, slots_eye,
|
||
image_transform=single.transform,
|
||
image_preprocessor=image_preprocessor,
|
||
shuffle=True,
|
||
**loader_kw,
|
||
)
|
||
if run_bilat:
|
||
train_bilat_loader = make_loader(
|
||
bilat_train, slots_patient,
|
||
image_transform=bilateral.transform,
|
||
image_preprocessor=image_preprocessor,
|
||
shuffle=True,
|
||
**loader_kw,
|
||
)
|
||
eval_transform = build_eval_transform(args.backbone)
|
||
val_loader = make_loader(
|
||
bilat_val, slots_patient,
|
||
image_transform=eval_transform,
|
||
image_preprocessor=image_preprocessor,
|
||
shuffle=False,
|
||
**loader_kw,
|
||
)
|
||
|
||
# ---- holdout loader (optional) ---------------------------------
|
||
holdout_bilat: list = []
|
||
holdout_loader = None
|
||
if split.holdout is not None and not split.holdout.empty:
|
||
holdout_bilat = filter_bilateral_samples(
|
||
profile_patient.build_samples(df=split.holdout, clinical=data)
|
||
)
|
||
if holdout_bilat:
|
||
holdout_loader = make_loader(
|
||
holdout_bilat, slots_patient,
|
||
image_transform=eval_transform,
|
||
image_preprocessor=image_preprocessor,
|
||
shuffle=False,
|
||
**loader_kw,
|
||
)
|
||
print(f" [fold {fold+1}] holdout_n={len(holdout_bilat)} (bilateral patients)", flush=True)
|
||
|
||
opt_single = torch.optim.Adam(single.parameters(), lr=args.lr) if run_single else None
|
||
opt_bilateral = torch.optim.Adam(bilateral.parameters(), lr=args.lr) if run_bilat else None
|
||
|
||
# ---- epoch log -------------------------------------------------
|
||
epoch_fields = [
|
||
"fold", "epoch",
|
||
"phase_single", "phase_bilat",
|
||
"main_epoch_single", "main_epoch_bilat",
|
||
"single_active", "bilat_active",
|
||
"single_train_loss", "single_train_acc",
|
||
"classic_val_auc", "classic_val_acc", "classic_val_n",
|
||
"ensemble_val_auc", "ensemble_val_acc", "ensemble_val_n",
|
||
"bilat_train_loss", "bilat_train_acc",
|
||
"bilat_val_auc", "bilat_val_acc", "bilat_val_n",
|
||
"classic_holdout_auc", "classic_holdout_acc",
|
||
"ensemble_holdout_auc", "ensemble_holdout_acc",
|
||
"bilat_holdout_auc", "bilat_holdout_acc",
|
||
"is_best_single", "is_best_bilat",
|
||
"is_best_holdout_single", "is_best_holdout_bilat",
|
||
]
|
||
fold_logger = HypertowerLogger(run_dir=fold_dir)
|
||
|
||
# ---- best-epoch trackers ---------------------------------------
|
||
best_single_auc = -1.0
|
||
best_bilat_auc = -1.0
|
||
best_epoch_single = 0
|
||
best_epoch_bilat = 0
|
||
best_single_state: Optional[dict] = None
|
||
best_bilat_state: Optional[dict] = None
|
||
snap_classic: dict = {}
|
||
snap_ensemble: dict = {}
|
||
snap_bilat: dict = {}
|
||
snap_holdout_single: dict = {}
|
||
snap_holdout_bilat: dict = {}
|
||
best_holdout_single_auc = -1.0
|
||
best_holdout_bilat_auc = -1.0
|
||
best_epoch_holdout_single = 0
|
||
best_epoch_holdout_bilat = 0
|
||
best_holdout_single_state: Optional[dict] = None
|
||
best_holdout_bilat_state: Optional[dict] = None
|
||
|
||
if run_single:
|
||
print(
|
||
f" [fold {fold+1}] single_train_n={len(eye_train)} (eye-level) "
|
||
f"val_n={len(bilat_val)} "
|
||
f"single_warmup={single_warmup_tower}+{single_warmup_fused} total={total_single_epochs}",
|
||
flush=True,
|
||
)
|
||
else:
|
||
print(
|
||
f" [fold {fold+1}] bilat_train_n={len(bilat_train)} (bilateral) "
|
||
f"val_n={len(bilat_val)} "
|
||
f"bilat_warmup={bilat_warmup_tower}+{bilat_warmup_fused} total={total_bilat_epochs}",
|
||
flush=True,
|
||
)
|
||
|
||
# ---- epoch loop ------------------------------------------------
|
||
for epoch in range(total_epochs):
|
||
if not run_single:
|
||
phase_single, main_epoch_single, single_active = "inactive", 0, False
|
||
elif epoch < single_warmup_tower:
|
||
phase_single, main_epoch_single, single_active = "tower_warmup", 0, True
|
||
elif epoch < (single_warmup_tower + single_warmup_fused):
|
||
phase_single, main_epoch_single, single_active = "fused_warmup", 0, True
|
||
elif epoch < total_single_epochs:
|
||
phase_single, main_epoch_single, single_active = (
|
||
"main",
|
||
epoch - single_warmup_tower - single_warmup_fused + 1,
|
||
True,
|
||
)
|
||
else:
|
||
phase_single, main_epoch_single, single_active = "done", main_epochs, False
|
||
|
||
if not run_bilat:
|
||
phase_bilat, main_epoch_bilat, bilat_active = "inactive", 0, False
|
||
elif epoch < bilat_warmup_tower:
|
||
phase_bilat, main_epoch_bilat, bilat_active = "tower_warmup", 0, True
|
||
elif epoch < (bilat_warmup_tower + bilat_warmup_fused):
|
||
phase_bilat, main_epoch_bilat, bilat_active = "fused_warmup", 0, True
|
||
elif epoch < total_bilat_epochs:
|
||
phase_bilat, main_epoch_bilat, bilat_active = (
|
||
"main",
|
||
epoch - bilat_warmup_tower - bilat_warmup_fused + 1,
|
||
True,
|
||
)
|
||
else:
|
||
phase_bilat, main_epoch_bilat, bilat_active = "done", main_epochs, False
|
||
|
||
if run_single and single_active:
|
||
sl_loss, sl_acc = train_single_epoch(
|
||
single, train_single_loader, opt_single, device,
|
||
phase=phase_single, bcd_prob=float(args.bcd_prob),
|
||
)
|
||
else:
|
||
sl_loss, sl_acc = nan, nan
|
||
|
||
if run_bilat and bilat_active:
|
||
bl_loss, bl_acc = train_bilateral_epoch(
|
||
bilateral, train_bilat_loader, opt_bilateral, device,
|
||
phase=phase_bilat, bcd_prob=float(args.bcd_prob),
|
||
)
|
||
else:
|
||
bl_loss, bl_acc = nan, nan
|
||
|
||
if run_single and tower_mode == "single":
|
||
y_cl, p_cl, p_cl_img, p_cl_md = collect_probs_single_components(
|
||
single, val_loader, device, aggregate_patient=False
|
||
)
|
||
cl_acc, cl_auc, cl_n = _score_arrays(y_cl, p_cl, num_classes)
|
||
cl_acc_img = float((p_cl_img.argmax(1) == y_cl).mean()) if y_cl.size else nan
|
||
cl_acc_md = float((p_cl_md.argmax(1) == y_cl).mean()) if y_cl.size else nan
|
||
_, cl_auc_img, _ = _score_arrays(y_cl, p_cl_img, num_classes)
|
||
_, cl_auc_md, _ = _score_arrays(y_cl, p_cl_md, num_classes)
|
||
y_en = np.array([], dtype=np.int64)
|
||
p_en = np.zeros((0, 0), dtype=np.float32)
|
||
en_acc = en_auc = nan
|
||
en_n = 0
|
||
en_acc_img = en_acc_md = en_auc_img = en_auc_md = nan
|
||
elif run_single and tower_mode == "ensemble":
|
||
y_en, p_en, p_en_img, p_en_md = collect_probs_single_components(
|
||
single, val_loader, device, aggregate_patient=True
|
||
)
|
||
en_acc, en_auc, en_n = _score_arrays(y_en, p_en, num_classes)
|
||
en_acc_img = float((p_en_img.argmax(1) == y_en).mean()) if y_en.size else nan
|
||
en_acc_md = float((p_en_md.argmax(1) == y_en).mean()) if y_en.size else nan
|
||
_, en_auc_img, _ = _score_arrays(y_en, p_en_img, num_classes)
|
||
_, en_auc_md, _ = _score_arrays(y_en, p_en_md, num_classes)
|
||
y_cl = np.array([], dtype=np.int64)
|
||
p_cl = np.zeros((0, 0), dtype=np.float32)
|
||
cl_acc = cl_auc = nan
|
||
cl_n = 0
|
||
cl_acc_img = cl_acc_md = cl_auc_img = cl_auc_md = nan
|
||
else:
|
||
y_cl = y_en = np.array([], dtype=np.int64)
|
||
p_cl = p_en = np.zeros((0, 0), dtype=np.float32)
|
||
cl_acc = cl_auc = en_acc = en_auc = nan
|
||
cl_n = en_n = 0
|
||
cl_acc_img = cl_acc_md = en_acc_img = en_acc_md = nan
|
||
cl_auc_img = cl_auc_md = en_auc_img = en_auc_md = nan
|
||
|
||
if run_bilat:
|
||
y_bi, p_bi, p_bi_img, p_bi_md = collect_probs_bilateral_components(
|
||
bilateral, val_loader, device
|
||
)
|
||
bi_acc, bi_auc, bi_n = _score_arrays(y_bi, p_bi, num_classes)
|
||
bi_acc_img = float((p_bi_img.argmax(1) == y_bi).mean()) if y_bi.size else nan
|
||
bi_acc_md = float((p_bi_md.argmax(1) == y_bi).mean()) if y_bi.size else nan
|
||
_, bi_auc_img, _ = _score_arrays(y_bi, p_bi_img, num_classes)
|
||
_, bi_auc_md, _ = _score_arrays(y_bi, p_bi_md, num_classes)
|
||
else:
|
||
y_bi = np.array([], dtype=np.int64)
|
||
p_bi = np.zeros((0, 0), dtype=np.float32)
|
||
bi_acc = bi_auc = nan
|
||
bi_n = 0
|
||
bi_acc_img = bi_acc_md = bi_auc_img = bi_auc_md = nan
|
||
|
||
# --- holdout evaluation ------------------------------------
|
||
if holdout_loader is not None:
|
||
if run_single and tower_mode == "single":
|
||
y_cl_h, p_cl_h, _, _ = collect_probs_single_components(
|
||
single, holdout_loader, device, aggregate_patient=False
|
||
)
|
||
_, cl_auc_h, _ = _score_arrays(y_cl_h, p_cl_h, num_classes)
|
||
cl_acc_h = float((p_cl_h.argmax(1) == y_cl_h).mean()) if y_cl_h.size else nan
|
||
en_auc_h = en_acc_h = nan
|
||
elif run_single and tower_mode == "ensemble":
|
||
y_en_h, p_en_h, _, _ = collect_probs_single_components(
|
||
single, holdout_loader, device, aggregate_patient=True
|
||
)
|
||
_, en_auc_h, _ = _score_arrays(y_en_h, p_en_h, num_classes)
|
||
en_acc_h = float((p_en_h.argmax(1) == y_en_h).mean()) if y_en_h.size else nan
|
||
cl_auc_h = cl_acc_h = nan
|
||
else:
|
||
cl_auc_h = cl_acc_h = en_auc_h = en_acc_h = nan
|
||
if run_bilat:
|
||
y_bi_h, p_bi_h, _, _ = collect_probs_bilateral_components(
|
||
bilateral, holdout_loader, device
|
||
)
|
||
_, bi_auc_h, _ = _score_arrays(y_bi_h, p_bi_h, num_classes)
|
||
bi_acc_h = float((p_bi_h.argmax(1) == y_bi_h).mean()) if y_bi_h.size else nan
|
||
else:
|
||
bi_auc_h = bi_acc_h = nan
|
||
else:
|
||
cl_auc_h = cl_acc_h = en_auc_h = en_acc_h = bi_auc_h = bi_acc_h = nan
|
||
|
||
# Best-epoch checks (restricted to main phase).
|
||
target_single_auc = cl_auc if tower_mode == "single" else en_auc
|
||
target_holdout_single_auc = cl_auc_h if tower_mode == "single" else en_auc_h
|
||
single_ckpt_eligible = run_single and (phase_single == "main")
|
||
is_best_single = (
|
||
single_ckpt_eligible
|
||
and (not np.isnan(target_single_auc))
|
||
and (target_single_auc > best_single_auc)
|
||
)
|
||
if is_best_single:
|
||
best_single_auc = target_single_auc
|
||
best_epoch_single = epoch + 1
|
||
best_single_state = copy.deepcopy(single.state_dict())
|
||
if tower_mode == "single":
|
||
snap_cl, _, _, _ = _tune_and_snap(y_cl, p_cl, cl_acc, num_classes, args, args.ece_bins)
|
||
snap_classic = snap_cl
|
||
else:
|
||
snap_en, _, _, _ = _tune_and_snap(y_en, p_en, en_acc, num_classes, args, args.ece_bins)
|
||
snap_ensemble = snap_en
|
||
snap_holdout_single = {
|
||
"auc": float(target_holdout_single_auc),
|
||
"acc": float(cl_acc_h if tower_mode == "single" else en_acc_h),
|
||
}
|
||
|
||
is_best_holdout_single = (
|
||
holdout_loader is not None
|
||
and single_ckpt_eligible
|
||
and (not np.isnan(target_holdout_single_auc))
|
||
and (target_holdout_single_auc > best_holdout_single_auc)
|
||
)
|
||
if is_best_holdout_single:
|
||
best_holdout_single_auc = target_holdout_single_auc
|
||
best_epoch_holdout_single = epoch + 1
|
||
best_holdout_single_state = copy.deepcopy(single.state_dict())
|
||
|
||
bilat_ckpt_eligible = run_bilat and (phase_bilat == "main")
|
||
is_best_bilat = (
|
||
bilat_ckpt_eligible
|
||
and (not np.isnan(bi_auc))
|
||
and (bi_auc > best_bilat_auc)
|
||
)
|
||
if is_best_bilat:
|
||
best_bilat_auc = bi_auc
|
||
best_epoch_bilat = epoch + 1
|
||
best_bilat_state = copy.deepcopy(bilateral.state_dict())
|
||
snap_bi, _, _, _ = _tune_and_snap(y_bi, p_bi, bi_acc, num_classes, args, args.ece_bins)
|
||
snap_bilat = snap_bi
|
||
snap_holdout_bilat = {"auc": float(bi_auc_h), "acc": float(bi_acc_h)}
|
||
|
||
is_best_holdout_bilat = (
|
||
holdout_loader is not None
|
||
and bilat_ckpt_eligible
|
||
and (not np.isnan(bi_auc_h))
|
||
and (bi_auc_h > best_holdout_bilat_auc)
|
||
)
|
||
if is_best_holdout_bilat:
|
||
best_holdout_bilat_auc = bi_auc_h
|
||
best_epoch_holdout_bilat = epoch + 1
|
||
best_holdout_bilat_state = copy.deepcopy(bilateral.state_dict())
|
||
|
||
fold_logger.write_epoch_row({
|
||
"fold": fold, "epoch": epoch + 1,
|
||
"phase_single": phase_single, "phase_bilat": phase_bilat,
|
||
"main_epoch_single": main_epoch_single, "main_epoch_bilat": main_epoch_bilat,
|
||
"single_active": int(single_active), "bilat_active": int(bilat_active),
|
||
"single_train_loss": _f(sl_loss), "single_train_acc": _f(sl_acc),
|
||
"classic_val_auc": _f(cl_auc), "classic_val_acc": _f(cl_acc), "classic_val_n": cl_n,
|
||
"ensemble_val_auc": _f(en_auc), "ensemble_val_acc": _f(en_acc), "ensemble_val_n": en_n,
|
||
"bilat_train_loss": _f(bl_loss), "bilat_train_acc": _f(bl_acc),
|
||
"bilat_val_auc": _f(bi_auc), "bilat_val_acc": _f(bi_acc), "bilat_val_n": bi_n,
|
||
"classic_holdout_auc": _f(cl_auc_h), "classic_holdout_acc": _f(cl_acc_h),
|
||
"ensemble_holdout_auc": _f(en_auc_h), "ensemble_holdout_acc": _f(en_acc_h),
|
||
"bilat_holdout_auc": _f(bi_auc_h), "bilat_holdout_acc": _f(bi_acc_h),
|
||
"is_best_single": int(is_best_single),
|
||
"is_best_bilat": int(is_best_bilat),
|
||
"is_best_holdout_single": int(is_best_holdout_single),
|
||
"is_best_holdout_bilat": int(is_best_holdout_bilat),
|
||
}, optional_cols=epoch_fields)
|
||
|
||
if args.log_every > 0 and (epoch + 1) % args.log_every == 0:
|
||
hld_auc = target_holdout_single_auc if run_single else bi_auc_h
|
||
hld_suffix = f" hld_auc={hld_auc:.4f}" if holdout_loader is not None else ""
|
||
if run_single:
|
||
if tower_mode == "single":
|
||
msg = (
|
||
f" ep {epoch+1:>3}/{total_epochs} "
|
||
f"[single:{phase_single} {main_epoch_single}/{main_epochs}] "
|
||
f"fused(acc={cl_acc:.4f},auc={cl_auc:.4f}) "
|
||
f"img(acc={cl_acc_img:.4f},auc={cl_auc_img:.4f}) "
|
||
f"md(acc={cl_acc_md:.4f},auc={cl_auc_md:.4f}) "
|
||
f"(best_fused={best_single_auc:.4f} @ep{best_epoch_single})"
|
||
f"{hld_suffix}"
|
||
)
|
||
else:
|
||
msg = (
|
||
f" ep {epoch+1:>3}/{total_epochs} "
|
||
f"[single:{phase_single} {main_epoch_single}/{main_epochs}] "
|
||
f"fused(acc={en_acc:.4f},auc={en_auc:.4f}) "
|
||
f"img(acc={en_acc_img:.4f},auc={en_auc_img:.4f}) "
|
||
f"md(acc={en_acc_md:.4f},auc={en_auc_md:.4f}) "
|
||
f"(best_fused={best_single_auc:.4f} @ep{best_epoch_single})"
|
||
f"{hld_suffix}"
|
||
)
|
||
else:
|
||
msg = (
|
||
f" ep {epoch+1:>3}/{total_epochs} "
|
||
f"[bilat:{phase_bilat} {main_epoch_bilat}/{main_epochs}] "
|
||
f"fused(acc={bi_acc:.4f},auc={bi_auc:.4f}) "
|
||
f"img(acc={bi_acc_img:.4f},auc={bi_auc_img:.4f}) "
|
||
f"md(acc={bi_acc_md:.4f},auc={bi_auc_md:.4f}) "
|
||
f"(best_bilat={best_bilat_auc:.4f} @ep{best_epoch_bilat})"
|
||
f"{hld_suffix}"
|
||
)
|
||
print(msg, flush=True)
|
||
fold_logger.info(msg)
|
||
|
||
fold_logger.close()
|
||
|
||
if args.save_checkpoints:
|
||
if best_single_state is not None:
|
||
torch.save(best_single_state, fold_dir / "best_single.pt")
|
||
if best_bilat_state is not None:
|
||
torch.save(best_bilat_state, fold_dir / "best_bilateral.pt")
|
||
if best_holdout_single_state is not None:
|
||
torch.save(best_holdout_single_state, fold_dir / "best_holdout_single.pt")
|
||
if best_holdout_bilat_state is not None:
|
||
torch.save(best_holdout_bilat_state, fold_dir / "best_holdout_bilateral.pt")
|
||
|
||
if run_single:
|
||
if tower_mode == "single":
|
||
print(
|
||
f" [fold {fold+1}] BEST "
|
||
f"fused(acc={snap_classic.get('acc', nan):.4f},auc={snap_classic.get('auc', nan):.4f}) "
|
||
f"kappa={snap_classic.get('kappa', nan):.4f} "
|
||
f"F1={snap_classic.get('macro_f1', nan):.4f} "
|
||
f"ECE={snap_classic.get('ece', nan):.4f} @ep{best_epoch_single}",
|
||
flush=True,
|
||
)
|
||
else:
|
||
print(
|
||
f" [fold {fold+1}] BEST "
|
||
f"ensemble(acc={snap_ensemble.get('acc', nan):.4f},auc={snap_ensemble.get('auc', nan):.4f}) "
|
||
f"kappa={snap_ensemble.get('kappa', nan):.4f} "
|
||
f"F1={snap_ensemble.get('macro_f1', nan):.4f} "
|
||
f"ECE={snap_ensemble.get('ece', nan):.4f} @ep{best_epoch_single}",
|
||
flush=True,
|
||
)
|
||
else:
|
||
print(
|
||
f" [fold {fold+1}] BEST "
|
||
f"fused(acc={snap_bilat.get('acc', nan):.4f},auc={snap_bilat.get('auc', nan):.4f}) "
|
||
f"kappa={snap_bilat.get('kappa', nan):.4f} "
|
||
f"F1={snap_bilat.get('macro_f1', nan):.4f} "
|
||
f"ECE={snap_bilat.get('ece', nan):.4f} @ep{best_epoch_bilat}",
|
||
flush=True,
|
||
)
|
||
|
||
# Export best-epoch prediction artifacts.
|
||
if run_single and best_single_state is not None:
|
||
single.load_state_dict(best_single_state)
|
||
if run_bilat and best_bilat_state is not None:
|
||
bilateral.load_state_dict(best_bilat_state)
|
||
if run_single and tower_mode == "single":
|
||
y_cl_best, p_cl_best = collect_probs_classic(single, val_loader, device)
|
||
y_en_best = p_en_best = None
|
||
elif run_single and tower_mode == "ensemble":
|
||
y_en_best, p_en_best = collect_probs_ensemble(single, val_loader, device)
|
||
y_cl_best = p_cl_best = None
|
||
else:
|
||
y_cl_best = y_en_best = None
|
||
p_cl_best = p_en_best = None
|
||
if run_bilat:
|
||
y_bi_best, p_bi_best = collect_probs_bilateral(bilateral, val_loader, device)
|
||
else:
|
||
y_bi_best = p_bi_best = None
|
||
|
||
return FoldResult(
|
||
mode=mode, fold=fold,
|
||
best_epoch_single=best_epoch_single, best_epoch_bilat=best_epoch_bilat,
|
||
classic_val_auc=snap_classic.get("auc", nan),
|
||
classic_val_acc=snap_classic.get("acc", nan),
|
||
classic_val_kappa=snap_classic.get("kappa", nan),
|
||
classic_val_mcc=snap_classic.get("mcc", nan),
|
||
classic_val_f1=snap_classic.get("macro_f1", nan),
|
||
classic_val_recall=_sv(snap_classic.get("per_class_recall")),
|
||
classic_val_ece=snap_classic.get("ece", nan),
|
||
classic_val_threshold=snap_classic.get("threshold", nan),
|
||
classic_val_bias=_svf(snap_classic.get("bias")),
|
||
classic_val_n=snap_classic.get("n", 0),
|
||
ensemble_val_auc=snap_ensemble.get("auc", nan),
|
||
ensemble_val_acc=snap_ensemble.get("acc", nan),
|
||
ensemble_val_kappa=snap_ensemble.get("kappa", nan),
|
||
ensemble_val_mcc=snap_ensemble.get("mcc", nan),
|
||
ensemble_val_f1=snap_ensemble.get("macro_f1", nan),
|
||
ensemble_val_recall=_sv(snap_ensemble.get("per_class_recall")),
|
||
ensemble_val_ece=snap_ensemble.get("ece", nan),
|
||
ensemble_val_threshold=snap_ensemble.get("threshold", nan),
|
||
ensemble_val_bias=_svf(snap_ensemble.get("bias")),
|
||
ensemble_val_n=snap_ensemble.get("n", 0),
|
||
bilat_val_auc=snap_bilat.get("auc", nan),
|
||
bilat_val_acc=snap_bilat.get("acc", nan),
|
||
bilat_val_kappa=snap_bilat.get("kappa", nan),
|
||
bilat_val_mcc=snap_bilat.get("mcc", nan),
|
||
bilat_val_f1=snap_bilat.get("macro_f1", nan),
|
||
bilat_val_recall=_sv(snap_bilat.get("per_class_recall")),
|
||
bilat_val_ece=snap_bilat.get("ece", nan),
|
||
bilat_val_threshold=snap_bilat.get("threshold", nan),
|
||
bilat_val_bias=_svf(snap_bilat.get("bias")),
|
||
bilat_val_n=snap_bilat.get("n", 0),
|
||
classic_holdout_auc=snap_holdout_single.get("auc", nan) if tower_mode == "single" else nan,
|
||
classic_holdout_acc=snap_holdout_single.get("acc", nan) if tower_mode == "single" else nan,
|
||
ensemble_holdout_auc=snap_holdout_single.get("auc", nan) if tower_mode == "ensemble" else nan,
|
||
ensemble_holdout_acc=snap_holdout_single.get("acc", nan) if tower_mode == "ensemble" else nan,
|
||
bilat_holdout_auc=snap_holdout_bilat.get("auc", nan),
|
||
bilat_holdout_acc=snap_holdout_bilat.get("acc", nan),
|
||
holdout_n=len(holdout_bilat),
|
||
single_train_n=len(eye_train),
|
||
bilat_train_n=len(bilat_train),
|
||
), FoldArtifacts(
|
||
y_true_classic=y_cl_best, probs_classic=p_cl_best,
|
||
y_true_ensemble=y_en_best, probs_ensemble=p_en_best,
|
||
y_true_bilat=y_bi_best, probs_bilat=p_bi_best,
|
||
)
|
||
|
||
# ------------------------------------------------------------------
|
||
# Summary helpers
|
||
# ------------------------------------------------------------------
|
||
|
||
@staticmethod
|
||
def _summary(results: list[FoldResult]) -> dict:
|
||
def _ms(vals):
|
||
v = np.array(
|
||
[x for x in vals if x is not None and not np.isnan(float(x))], dtype=float
|
||
)
|
||
return (float(np.mean(v)) if v.size else None, float(np.std(v)) if v.size else None)
|
||
|
||
out = {}
|
||
for label, prefix in [
|
||
("classic_best_val", "classic_val"),
|
||
("ensemble_best_val", "ensemble_val"),
|
||
("bilat_best_val", "bilat_val"),
|
||
]:
|
||
sub = {}
|
||
for m in ["auc", "acc", "kappa", "mcc", "f1", "ece", "threshold"]:
|
||
vals = [getattr(r, f"{prefix}_{m}") for r in results]
|
||
mean, std = _ms(vals)
|
||
sub[f"{m}_mean"] = mean
|
||
if m in ("auc", "f1", "kappa"):
|
||
sub[f"{m}_std"] = std
|
||
out[label] = sub
|
||
|
||
for label, prefix in [
|
||
("classic_holdout", "classic_holdout"),
|
||
("ensemble_holdout", "ensemble_holdout"),
|
||
("bilat_holdout", "bilat_holdout"),
|
||
]:
|
||
sub = {}
|
||
for m in ["auc", "acc"]:
|
||
vals = [getattr(r, f"{prefix}_{m}") for r in results]
|
||
mean, std = _ms(vals)
|
||
sub[f"{m}_mean"] = mean
|
||
if m == "auc":
|
||
sub[f"{m}_std"] = std
|
||
out[label] = sub
|
||
|
||
for delta_label, prefix_a, prefix_b in [
|
||
("delta_ensemble_vs_classic", "classic_val", "ensemble_val"),
|
||
("delta_bilat_vs_ensemble", "ensemble_val", "bilat_val"),
|
||
]:
|
||
delta = {}
|
||
for m in ["auc", "f1", "kappa"]:
|
||
pairs = [
|
||
getattr(r, f"{prefix_b}_{m}") - getattr(r, f"{prefix_a}_{m}")
|
||
for r in results
|
||
if not np.isnan(float(getattr(r, f"{prefix_a}_{m}")))
|
||
and not np.isnan(float(getattr(r, f"{prefix_b}_{m}")))
|
||
]
|
||
delta[f"{m}_mean"] = float(np.mean(pairs)) if pairs else None
|
||
delta[f"{m}_std"] = float(np.std(pairs)) if pairs else None
|
||
out[delta_label] = delta
|
||
|
||
out["n_folds_completed"] = len(results)
|
||
out["single_train_mode"] = "eye-level (all OD+OS samples)"
|
||
out["bilat_train_mode"] = "patient-level (bilateral only)"
|
||
out["eval_note"] = (
|
||
"classic=eye-level SingleEyeHT; "
|
||
"ensemble=patient-level SingleEyeHT (OD+OS averaged); "
|
||
"bilateral=patient-level BilateralHT"
|
||
)
|
||
return out
|
||
|
||
@staticmethod
|
||
def _print_summary(mode: str, s: dict, tower_mode: str | None = None) -> None:
|
||
def f(v):
|
||
return "nan" if v is None else f"{v:.4f}"
|
||
|
||
cv = s["classic_best_val"]
|
||
ev = s["ensemble_best_val"]
|
||
bv = s["bilat_best_val"]
|
||
d1 = s["delta_ensemble_vs_classic"]
|
||
d2 = s["delta_bilat_vs_ensemble"]
|
||
|
||
print(f"\n=== Summary [{mode}] — best-epoch val ===")
|
||
print(f" {'':26s} {'AUC':>8} {'ACC':>8} {'Kappa':>8} {'F1-mac':>8} {'ECE':>8}")
|
||
if tower_mode == "single":
|
||
rows = [("single (eye-lvl eval)", cv)]
|
||
elif tower_mode == "ensemble":
|
||
rows = [("ensemble (pat-lvl eval)", ev)]
|
||
elif tower_mode == "bilateral":
|
||
rows = [("bilateral (bilat eval)", bv)]
|
||
else:
|
||
rows = [
|
||
("classic (eye-lvl eval)", cv),
|
||
("ensemble (pat-lvl eval)", ev),
|
||
("bilateral (bilat eval)", bv),
|
||
]
|
||
for label, d in rows:
|
||
print(
|
||
f" {label:26s} "
|
||
f"{f(d['auc_mean']):>8} {f(d['acc_mean']):>8} "
|
||
f"{f(d['kappa_mean']):>8} {f(d['f1_mean']):>8} {f(d['ece_mean']):>8}"
|
||
)
|
||
if tower_mode is None:
|
||
print(
|
||
f" {'Δ ensemble−classic':26s} "
|
||
f"{f(d1['auc_mean']):>8} {'':>8} "
|
||
f"{f(d1['kappa_mean']):>8} {f(d1['f1_mean']):>8}"
|
||
)
|
||
print(
|
||
f" {'Δ bilateral−ensemble':26s} "
|
||
f"{f(d2['auc_mean']):>8} {'':>8} "
|
||
f"{f(d2['kappa_mean']):>8} {f(d2['f1_mean']):>8}"
|
||
)
|
||
|
||
|
||
# ---------------------------------------------------------------------------
|
||
# V2ModeComparator — thin backward-compat shim
|
||
# ---------------------------------------------------------------------------
|
||
|
||
class V2ModeComparator:
|
||
"""Backward-compat shim used by run_multifold_v2_modes.py."""
|
||
|
||
@staticmethod
|
||
def build_parser() -> argparse.ArgumentParser:
|
||
return V2HyperTower.build_parser()
|
||
|
||
@staticmethod
|
||
def run(cli_args=None) -> Path:
|
||
args = V2HyperTower.build_parser().parse_args(cli_args)
|
||
return V2HyperTower(args).run()
|
||
|
||
|
||
# ---------------------------------------------------------------------------
|
||
# Module-level aliases (kept for backward compat; use V2HyperTower directly)
|
||
# ---------------------------------------------------------------------------
|
||
|
||
def build_parser() -> argparse.ArgumentParser:
|
||
return V2HyperTower.build_parser()
|
||
|
||
|
||
def run_mode(args) -> Path:
|
||
return V2HyperTower(args).run()
|