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Add initial R project file for xMap biomarker analysis

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rpotter6298
2026-05-12 11:01:52 +02:00
commit 7b124dbe07
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assignment/inspect_data.py
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import pandas as pd
import numpy as np
# Let's inspect the files
antigen1 = pd.read_excel('xmap_biomarkers/data/02a.AP0211_GLA02_SBA01_Antigen_list.xlsx')
antigen2 = pd.read_excel('xmap_biomarkers/data/02b. AP0211 GLA02_SBA02_Antigen_list.xlsx')
data1 = pd.read_excel('xmap_biomarkers/data/12a. AP0211 GLA02 SBA01_Data Intensity.xlsx')
data2 = pd.read_excel('xmap_biomarkers/data/12b. AP0211 GLA02 SBA02_Data_Intensity.xlsx')
print("Antigen 1:")
print(antigen1[['BeadID (Analyte)', 'Antigen name', 'Gene name']].head(5))
print("\nData 1 columns:")
print(data1.columns[:10])
print(data1[['Internal LIMS ID', 'Tube label']].head(3))