ryan/intro_data_science
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Add initial R project file for xMap biomarker analysis

Browse Source
This commit is contained in:
rpotter6298
2026-05-12 11:01:52 +02:00
commit 7b124dbe07
29 changed files with 15190 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files
assignment/slice_1_significant_7.csv
Executable
+61
View File
@@ -0,0 +1,61 @@
Internal LIMS ID,Original ID,group,HPRA000767,HPRA034083,HPRA006876,HPRA019035,HPRA003490,HPRA022019,HPRA017192
GLA_02-0001,HD1,0,0.35232875412743836,-0.07466323693315602,0.44245110715157626,0.2108019944690416,-0.02567836198464133,-0.9237625501741185,0.0282527608663072
GLA_02-0002,GC1,1,2.1848650359762796,0.46707545924824756,1.272994791325173,1.8575994781015295,2.7092902566946657,1.367954769004817,0.22004125911044942
GLA_02-0003,HD2,0,0.5199692144152579,-0.3586975666356526,0.12417658064200883,1.3830033043092367,1.2274931203578958,-0.12888872297595116,-0.3437917008541735
GLA_02-0004,GC2,1,1.1551891187702465,0.46707545924824756,0.630671183129744,0.08084688608241689,-0.02567836198464133,-0.41699532362966957,0.7531636406708422
GLA_02-0005,HD3,0,-0.590506967188477,-0.07466323693315602,-1.423605220494033,-1.5912144786342457,-0.3750248736958534,-0.16584910275474768,-1.2920292458737959
GLA_02-0006,GC3,1,0.5199692144152579,0.27318288197579516,0.261582721027003,-0.4313446602894372,0.3757493952089582,-0.24366563974217237,0.13856283104764291
GLA_02-0007,HD4,0,-0.2902160584137654,-0.9045879980206282,-0.400547912982761,-0.6717769904412173,-0.4381684293524799,-1.1432728016416078,-0.5582503491075028
GLA_02-0008,GC4,1,-0.1261809533964279,0.27318288197579516,0.02364907656915124,-0.0848796984566102,0.08086097914728763,0.15566455478357288,-0.042994478034408284
GLA_02-0009,HD5,0,-0.2902160584137654,-1.1328513210042335,-1.5778713598477223,-0.7720934214376011,-0.02567836198464133,-1.1432728016416078,1.4401229700242133
GLA_02-0010,GC5,1,-0.8599660630370055,-0.5218015293190893,-0.8916775265538579,-0.1295964012824051,-0.5028907123219312,-1.9321891028613036,-0.8089945764162757
GLA_02-0011,HD6,0,-0.6551926404916829,-0.21039226897561197,-0.8916775265538579,1.9113176496764868,-0.08067958864585108,-0.46452531580820833,-1.0819534185504869
GLA_02-0012,GC6,1,0.8937281328887505,0.6380248624129868,0.34537617346978017,0.3606861862444068,1.3543402748206086,0.7603992566600379,0.3324189683428917
GLA_02-0013,HD7,0,-1.006407288521192,1.3191908685330245,0.17166045293859225,0.5758124649356954,-0.5028907123219312,-0.12888872297595116,0.8954656660271288
GLA_02-0014,GC7,1,-1.006407288521192,0.27318288197579516,0.34537617346978017,1.0475054765946445,-0.3750248736958534,0.7062338918719954,0.180005962489681
GLA_02-0015,HD8,0,-0.1261809533964279,0.16581886941762303,-0.266021181355027,-0.15249457371280856,-0.13689854766454324,-1.3986079992090785,0.25874320530494177
GLA_02-0016,GC8,1,0.07669004289574279,3.192803959189013,2.5047016917204554,2.5342421086924634,0.28127508298013165,2.02589469208438,1.9317839274191808
GLA_02-0017,HD9,0,-0.46598113040907496,-1.3940213631312095,-0.4361509291649099,-0.7720934214376011,-0.3750248736958534,-1.4932787680904613,-0.523117080076437
GLA_02-0018,GC9,1,2.5810825499648566,1.7919674328221287,1.748142257507378,0.9956827535056035,1.0934343198935665,1.2007661538537067,1.7411450057609106
GLA_02-0019,HD10,0,-0.07385793134159248,0.16581886941762303,-0.36576173515743865,-0.020369908386339404,-0.6373772221993065,-0.0931399283385384,0.1697801973386287
GLA_02-0020,GC10,1,0.5995767331336967,0.27318288197579516,0.5658743084429582,0.1930070355178175,-0.13689854766454324,0.15566455478357288,0.180005962489681
GLA_02-0021,HD11,0,-1.5980391294454694,-0.2828461181917133,-1.795129435817047,-1.7025434570017213,-2.060727174739533,2.1043358759870756,-2.3907516085189187
GLA_02-0022,GC11,1,0.5995767331336967,-0.21039226897561197,0.5658743084429582,-0.32379579678588893,0.28127508298013165,-0.24366563974217237,-0.3437917008541735
GLA_02-0023,HD12,0,-1.006407288521192,-1.5397546569910414,-1.510290738485404,-0.9159731221179215,-1.007203357563949,-0.025041699405784285,-0.9858503394712446
GLA_02-0024,GC12,1,0.5995767331336967,0.9275994073371407,0.12417658064200883,0.39168814816225406,0.6392381541215421,0.39634673352251676,0.180005962489681
GLA_02-0025,HD13,0,-1.243347128296541,-0.6097587101011761,-0.266021181355027,-1.7025434570017213,-1.8367271410145674,-1.4932787680904613,-1.3201450525991523
GLA_02-0026,GC13,1,0.7512180657634696,-0.5218015293190893,0.4236710161738875,0.3288867579513822,-0.6373772221993065,0.35314869286263434,-0.09282017771024566
GLA_02-0027,HD14,0,-0.46598113040907496,-1.6975547243729927,-1.0934250036740272,-1.2909445954160785,-0.5028907123219312,-1.3089763203708613,-1.8027560784947065
GLA_02-0028,GC14,1,-1.5046542208654317,0.37332947968758695,0.261582721027003,0.2962560552131855,-0.13689854766454324,-0.025041699405784285,0.4345137947460142
GLA_02-0029,HD15,0,0.5199692144152579,-0.14107555275683592,-0.4361509291649099,0.17496504456466822,0.9144837834704801,-0.41699532362966957,-0.269266507326344
GLA_02-0030,GC15,1,-0.1261809533964279,0.9275994073371407,1.0792208516956157,0.8428554498081914,0.08086097914728763,1.3252603859293541,0.7993475312252929
GLA_02-0031,HD16,0,-0.8599660630370055,0.37332947968758695,0.21743085177940483,0.021023534607523015,-0.19438640896761453,0.15566455478357288,-0.6881572939856614
GLA_02-0032,GC16,1,-0.1261809533964279,0.46707545924824756,0.3042039810112527,0.5357951513806428,0.7211210490118753,-0.0931399283385384,0.13856283104764291
GLA_02-0033,HD17,0,-1.3275117711947564,-1.1328513210042335,-2.1241813705332078,-1.5912144786342457,-0.9289881496989316,-0.7329088093186927,0.9589373345061143
GLA_02-0034,GC17,1,0.7512180657634696,1.2700530506263426,1.2244940341633144,0.9595695781717004,0.8770313739570519,1.4413369070037392,0.6920651327796619
GLA_02-0035,HD18,0,1.1551891187702465,-0.4382392829641482,-0.4361509291649099,-0.32379579678588893,0.9876795661224924,-0.6188890545809432,-0.8514263976814501
GLA_02-0036,GC18,1,-1.6949405450077124,-0.07466323693315602,-0.6275418199065357,-0.9539229932757979,-0.6373772221993065,-1.4932787680904613,-0.4719476113394781
GLA_02-0037,HD19,0,-2.3672695908285277,-1.3940213631312095,0.4970123702869271,-1.245225540328053,-1.8367271410145674,-1.0665209157815445,-2.205543008398773
GLA_02-0038,GC19,1,0.4376155679100238,0.37332947968758695,0.9286948268745908,1.6488861194603364,0.800332859856034,1.856926729618737,1.5018120406628783
GLA_02-0039,HD20,0,-1.0829486070893226,-0.2828461181917133,-0.266021181355027,0.0004828554070358009,-2.3041139445173093,-0.41699532362966957,0.4506335429052696
GLA_02-0040,GC20,1,1.7515716229642004,-3.0465169149406215,-0.7110135596806529,-0.8069294112696193,2.5697964024636426,0.6475274561670843,-0.7676687753363817
GLA_02-0041,HD21,0,0.5199692144152579,0.32410401273329337,0.02364907656915124,-0.04154251982303697,0.28127508298013165,-0.12888872297595116,0.2682185732104478
GLA_02-0042,GC21,1,0.4376155679100238,0.27318288197579516,0.4236710161738875,0.5626259544871942,-0.6373772221993065,1.8493332381788996,2.698755255707267
GLA_02-0043,HD22,0,1.36215674964206,1.8239539180061284,2.5388437926248315,0.6270965545567145,1.2917726281142086,1.2067063129145912,1.3665458905577537
GLA_02-0044,GC22,1,0.8937281328887505,0.9275994073371407,1.017746059525529,1.2166816763296446,0.8770313739570519,0.47659309362440433,0.36751709734547144
GLA_02-0045,HD23,0,0.560105242714116,-0.21039226897561197,-0.3317634072842041,-0.175765283129113,0.7211210490118753,2.151787994821404,-0.3285616093849758
GLA_02-0046,GC23,1,0.26390228364577784,0.05026222610752633,0.4236710161738875,0.22835536044088886,0.46675141836634826,-0.16584910275474768,0.5714070318821254
GLA_02-0047,HD24,0,-0.7216031003080254,0.16581886941762303,0.46092972891434936,-0.1295964012824051,-1.4366368356194654,-0.7937039255879613,0.039741986560203224
GLA_02-0048,GC24,1,0.6766080659700437,0.27318288197579516,0.46092972891434936,0.1930070355178175,1.0934343198935665,0.5495861890333105,0.29618098843361607
GLA_02-0049,HD25,0,0.560105242714116,0.22045985255696643,-0.9896812734011824,-0.842503991780491,1.0234547286868367,0.7201793080175072,-1.0332138851324102
GLA_02-0050,GC25,1,-1.6949405450077124,-0.5218015293190893,0.4970123702869271,0.1930070355178175,0.08086097914728763,-0.6188890545809432,0.0282527608663072
GLA_02-0051,HD26,0,-0.1796485557940177,0.5551111654049726,-0.29852532417263866,0.4219245788493127,0.02815333891078876,0.25975459219072217,0.1594652522755021
GLA_02-0052,GC26,1,-0.590506967188477,-0.5218015293190893,-0.400547912982761,-1.1145373129154326,-2.060727174739533,-1.3089763203708613,-0.7274038886185776
GLA_02-0053,HD27,0,0.07669004289574279,1.110079118757727,0.38517503618942456,-0.4880953917399898,-0.13689854766454324,0.25975459219072217,0.7108077735168263
GLA_02-0054,GC27,1,1.2757048596014828,-0.21039226897561197,0.17166045293859225,1.5318585169924672,0.6392381541215421,0.43744399060968686,1.3937513160288415
GLA_02-0055,HD28,0,-1.6949405450077124,-0.702537386518218,-2.6160571348885644,-2.2197774468650264,-1.62942284163079,-1.8122869533371007,-1.4371964600580391
GLA_02-0056,GC28,1,0.9618768162110931,0.7904377538444992,0.5658743084429582,0.8832420124050829,0.28127508298013165,0.25975459219072217,1.184169217150501
GLA_02-0057,HD29,0,-0.5274624027801623,-2.0573709334455725,-1.4449224824719635,-2.0107497209634073,-0.4381684293524799,-0.7937039255879613,-1.6616588389238645
GLA_02-0058,GC29,1,0.6766080659700437,0.27318288197579516,0.3042039810112527,0.2962560552131855,0.08086097914728763,-0.24366563974217237,0.41814837982691927
GLA_02-0059,HD30,0,-0.23430959174119342,-1.6975547243729927,-1.3816551731546647,-0.842503991780491,-0.4381684293524799,-0.2040851596041294,-1.1577851731742392
GLA_02-0060,GC30,1,0.823548219425645,1.1656529178554447,1.6460076223464033,0.8428554498081914,0.6392381541215421,0.8570987220809919,0.25874320530494177
1 Internal LIMS ID Original ID group HPRA000767 HPRA034083 HPRA006876 HPRA019035 HPRA003490 HPRA022019 HPRA017192
2 GLA_02-0001 HD1 0 0.35232875412743836 -0.07466323693315602 0.44245110715157626 0.2108019944690416 -0.02567836198464133 -0.9237625501741185 0.0282527608663072
3 GLA_02-0002 GC1 1 2.1848650359762796 0.46707545924824756 1.272994791325173 1.8575994781015295 2.7092902566946657 1.367954769004817 0.22004125911044942
4 GLA_02-0003 HD2 0 0.5199692144152579 -0.3586975666356526 0.12417658064200883 1.3830033043092367 1.2274931203578958 -0.12888872297595116 -0.3437917008541735
5 GLA_02-0004 GC2 1 1.1551891187702465 0.46707545924824756 0.630671183129744 0.08084688608241689 -0.02567836198464133 -0.41699532362966957 0.7531636406708422
6 GLA_02-0005 HD3 0 -0.590506967188477 -0.07466323693315602 -1.423605220494033 -1.5912144786342457 -0.3750248736958534 -0.16584910275474768 -1.2920292458737959
7 GLA_02-0006 GC3 1 0.5199692144152579 0.27318288197579516 0.261582721027003 -0.4313446602894372 0.3757493952089582 -0.24366563974217237 0.13856283104764291
8 GLA_02-0007 HD4 0 -0.2902160584137654 -0.9045879980206282 -0.400547912982761 -0.6717769904412173 -0.4381684293524799 -1.1432728016416078 -0.5582503491075028
9 GLA_02-0008 GC4 1 -0.1261809533964279 0.27318288197579516 0.02364907656915124 -0.0848796984566102 0.08086097914728763 0.15566455478357288 -0.042994478034408284
10 GLA_02-0009 HD5 0 -0.2902160584137654 -1.1328513210042335 -1.5778713598477223 -0.7720934214376011 -0.02567836198464133 -1.1432728016416078 1.4401229700242133
11 GLA_02-0010 GC5 1 -0.8599660630370055 -0.5218015293190893 -0.8916775265538579 -0.1295964012824051 -0.5028907123219312 -1.9321891028613036 -0.8089945764162757
12 GLA_02-0011 HD6 0 -0.6551926404916829 -0.21039226897561197 -0.8916775265538579 1.9113176496764868 -0.08067958864585108 -0.46452531580820833 -1.0819534185504869
13 GLA_02-0012 GC6 1 0.8937281328887505 0.6380248624129868 0.34537617346978017 0.3606861862444068 1.3543402748206086 0.7603992566600379 0.3324189683428917
14 GLA_02-0013 HD7 0 -1.006407288521192 1.3191908685330245 0.17166045293859225 0.5758124649356954 -0.5028907123219312 -0.12888872297595116 0.8954656660271288
15 GLA_02-0014 GC7 1 -1.006407288521192 0.27318288197579516 0.34537617346978017 1.0475054765946445 -0.3750248736958534 0.7062338918719954 0.180005962489681
16 GLA_02-0015 HD8 0 -0.1261809533964279 0.16581886941762303 -0.266021181355027 -0.15249457371280856 -0.13689854766454324 -1.3986079992090785 0.25874320530494177
17 GLA_02-0016 GC8 1 0.07669004289574279 3.192803959189013 2.5047016917204554 2.5342421086924634 0.28127508298013165 2.02589469208438 1.9317839274191808
18 GLA_02-0017 HD9 0 -0.46598113040907496 -1.3940213631312095 -0.4361509291649099 -0.7720934214376011 -0.3750248736958534 -1.4932787680904613 -0.523117080076437
19 GLA_02-0018 GC9 1 2.5810825499648566 1.7919674328221287 1.748142257507378 0.9956827535056035 1.0934343198935665 1.2007661538537067 1.7411450057609106
20 GLA_02-0019 HD10 0 -0.07385793134159248 0.16581886941762303 -0.36576173515743865 -0.020369908386339404 -0.6373772221993065 -0.0931399283385384 0.1697801973386287
21 GLA_02-0020 GC10 1 0.5995767331336967 0.27318288197579516 0.5658743084429582 0.1930070355178175 -0.13689854766454324 0.15566455478357288 0.180005962489681
22 GLA_02-0021 HD11 0 -1.5980391294454694 -0.2828461181917133 -1.795129435817047 -1.7025434570017213 -2.060727174739533 2.1043358759870756 -2.3907516085189187
23 GLA_02-0022 GC11 1 0.5995767331336967 -0.21039226897561197 0.5658743084429582 -0.32379579678588893 0.28127508298013165 -0.24366563974217237 -0.3437917008541735
24 GLA_02-0023 HD12 0 -1.006407288521192 -1.5397546569910414 -1.510290738485404 -0.9159731221179215 -1.007203357563949 -0.025041699405784285 -0.9858503394712446
25 GLA_02-0024 GC12 1 0.5995767331336967 0.9275994073371407 0.12417658064200883 0.39168814816225406 0.6392381541215421 0.39634673352251676 0.180005962489681
26 GLA_02-0025 HD13 0 -1.243347128296541 -0.6097587101011761 -0.266021181355027 -1.7025434570017213 -1.8367271410145674 -1.4932787680904613 -1.3201450525991523
27 GLA_02-0026 GC13 1 0.7512180657634696 -0.5218015293190893 0.4236710161738875 0.3288867579513822 -0.6373772221993065 0.35314869286263434 -0.09282017771024566
28 GLA_02-0027 HD14 0 -0.46598113040907496 -1.6975547243729927 -1.0934250036740272 -1.2909445954160785 -0.5028907123219312 -1.3089763203708613 -1.8027560784947065
29 GLA_02-0028 GC14 1 -1.5046542208654317 0.37332947968758695 0.261582721027003 0.2962560552131855 -0.13689854766454324 -0.025041699405784285 0.4345137947460142
30 GLA_02-0029 HD15 0 0.5199692144152579 -0.14107555275683592 -0.4361509291649099 0.17496504456466822 0.9144837834704801 -0.41699532362966957 -0.269266507326344
31 GLA_02-0030 GC15 1 -0.1261809533964279 0.9275994073371407 1.0792208516956157 0.8428554498081914 0.08086097914728763 1.3252603859293541 0.7993475312252929
32 GLA_02-0031 HD16 0 -0.8599660630370055 0.37332947968758695 0.21743085177940483 0.021023534607523015 -0.19438640896761453 0.15566455478357288 -0.6881572939856614
33 GLA_02-0032 GC16 1 -0.1261809533964279 0.46707545924824756 0.3042039810112527 0.5357951513806428 0.7211210490118753 -0.0931399283385384 0.13856283104764291
34 GLA_02-0033 HD17 0 -1.3275117711947564 -1.1328513210042335 -2.1241813705332078 -1.5912144786342457 -0.9289881496989316 -0.7329088093186927 0.9589373345061143
35 GLA_02-0034 GC17 1 0.7512180657634696 1.2700530506263426 1.2244940341633144 0.9595695781717004 0.8770313739570519 1.4413369070037392 0.6920651327796619
36 GLA_02-0035 HD18 0 1.1551891187702465 -0.4382392829641482 -0.4361509291649099 -0.32379579678588893 0.9876795661224924 -0.6188890545809432 -0.8514263976814501
37 GLA_02-0036 GC18 1 -1.6949405450077124 -0.07466323693315602 -0.6275418199065357 -0.9539229932757979 -0.6373772221993065 -1.4932787680904613 -0.4719476113394781
38 GLA_02-0037 HD19 0 -2.3672695908285277 -1.3940213631312095 0.4970123702869271 -1.245225540328053 -1.8367271410145674 -1.0665209157815445 -2.205543008398773
39 GLA_02-0038 GC19 1 0.4376155679100238 0.37332947968758695 0.9286948268745908 1.6488861194603364 0.800332859856034 1.856926729618737 1.5018120406628783
40 GLA_02-0039 HD20 0 -1.0829486070893226 -0.2828461181917133 -0.266021181355027 0.0004828554070358009 -2.3041139445173093 -0.41699532362966957 0.4506335429052696
41 GLA_02-0040 GC20 1 1.7515716229642004 -3.0465169149406215 -0.7110135596806529 -0.8069294112696193 2.5697964024636426 0.6475274561670843 -0.7676687753363817
42 GLA_02-0041 HD21 0 0.5199692144152579 0.32410401273329337 0.02364907656915124 -0.04154251982303697 0.28127508298013165 -0.12888872297595116 0.2682185732104478
43 GLA_02-0042 GC21 1 0.4376155679100238 0.27318288197579516 0.4236710161738875 0.5626259544871942 -0.6373772221993065 1.8493332381788996 2.698755255707267
44 GLA_02-0043 HD22 0 1.36215674964206 1.8239539180061284 2.5388437926248315 0.6270965545567145 1.2917726281142086 1.2067063129145912 1.3665458905577537
45 GLA_02-0044 GC22 1 0.8937281328887505 0.9275994073371407 1.017746059525529 1.2166816763296446 0.8770313739570519 0.47659309362440433 0.36751709734547144
46 GLA_02-0045 HD23 0 0.560105242714116 -0.21039226897561197 -0.3317634072842041 -0.175765283129113 0.7211210490118753 2.151787994821404 -0.3285616093849758
47 GLA_02-0046 GC23 1 0.26390228364577784 0.05026222610752633 0.4236710161738875 0.22835536044088886 0.46675141836634826 -0.16584910275474768 0.5714070318821254
48 GLA_02-0047 HD24 0 -0.7216031003080254 0.16581886941762303 0.46092972891434936 -0.1295964012824051 -1.4366368356194654 -0.7937039255879613 0.039741986560203224
49 GLA_02-0048 GC24 1 0.6766080659700437 0.27318288197579516 0.46092972891434936 0.1930070355178175 1.0934343198935665 0.5495861890333105 0.29618098843361607
50 GLA_02-0049 HD25 0 0.560105242714116 0.22045985255696643 -0.9896812734011824 -0.842503991780491 1.0234547286868367 0.7201793080175072 -1.0332138851324102
51 GLA_02-0050 GC25 1 -1.6949405450077124 -0.5218015293190893 0.4970123702869271 0.1930070355178175 0.08086097914728763 -0.6188890545809432 0.0282527608663072
52 GLA_02-0051 HD26 0 -0.1796485557940177 0.5551111654049726 -0.29852532417263866 0.4219245788493127 0.02815333891078876 0.25975459219072217 0.1594652522755021
53 GLA_02-0052 GC26 1 -0.590506967188477 -0.5218015293190893 -0.400547912982761 -1.1145373129154326 -2.060727174739533 -1.3089763203708613 -0.7274038886185776
54 GLA_02-0053 HD27 0 0.07669004289574279 1.110079118757727 0.38517503618942456 -0.4880953917399898 -0.13689854766454324 0.25975459219072217 0.7108077735168263
55 GLA_02-0054 GC27 1 1.2757048596014828 -0.21039226897561197 0.17166045293859225 1.5318585169924672 0.6392381541215421 0.43744399060968686 1.3937513160288415
56 GLA_02-0055 HD28 0 -1.6949405450077124 -0.702537386518218 -2.6160571348885644 -2.2197774468650264 -1.62942284163079 -1.8122869533371007 -1.4371964600580391
57 GLA_02-0056 GC28 1 0.9618768162110931 0.7904377538444992 0.5658743084429582 0.8832420124050829 0.28127508298013165 0.25975459219072217 1.184169217150501
58 GLA_02-0057 HD29 0 -0.5274624027801623 -2.0573709334455725 -1.4449224824719635 -2.0107497209634073 -0.4381684293524799 -0.7937039255879613 -1.6616588389238645
59 GLA_02-0058 GC29 1 0.6766080659700437 0.27318288197579516 0.3042039810112527 0.2962560552131855 0.08086097914728763 -0.24366563974217237 0.41814837982691927
60 GLA_02-0059 HD30 0 -0.23430959174119342 -1.6975547243729927 -1.3816551731546647 -0.842503991780491 -0.4381684293524799 -0.2040851596041294 -1.1577851731742392
61 GLA_02-0060 GC30 1 0.823548219425645 1.1656529178554447 1.6460076223464033 0.8428554498081914 0.6392381541215421 0.8570987220809919 0.25874320530494177