ryan
40b46d2099
This repo carries data/smoke/labels.csv for the loose-file config and the same data inside smoke.hdb. Mounting the bundle at data/ made two sources claim one path, which the provider refuses. Giving the bundle its own mount keeps both configs working.
92 lines
2.1 KiB
Plaintext
92 lines
2.1 KiB
Plaintext
{
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"_notes": [
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"Bundle-backed variant: the dataset arrives as smoke.hdb rather than loose files.",
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"Mounted at 'bundled/' rather than 'data/' because this repo also carries the",
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"loose copy for tabular_smoke.json \u2014 two sources for one path is refused, so the",
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"bundle gets its own mount point and metadata_csv points there."
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],
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"run_name": "tabular_bundle",
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"num_classes": 2,
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"split_identity_level": 1,
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"eval_stage": "cd_fuse",
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"save_predictions": true,
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"seed": 1234,
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"folds": 3,
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"fold_seed": 100,
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"output_root": "results",
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"data": {
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"module": "hypertower_core.profiles.generic",
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"args": {
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"metadata_csv": "bundled/smoke/labels.csv",
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"id_column": "sample_id",
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"label_col": "diagnosis",
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"target_type": "classification",
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"group_column": "patient_id",
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"cat_cols": [
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"site"
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],
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"exclude_cols": [
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"notes"
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]
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}
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},
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"towers": [
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{
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"name": "cd",
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"module": "hypertower_core.components.towers.clinical_tower",
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"class": "ClinicalEncoder",
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"data_source": "matrix",
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"args": {
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"hidden_dim": 64
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}
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}
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],
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"stages": [
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{
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"name": "cd_warm",
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"type": "warm",
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"tower": "cd",
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"head_name": "cd_aux",
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"level": "sample",
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"epochs": 8
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},
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{
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"name": "cd_aux",
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"type": "head",
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"input": "cd",
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"train_with": "cd_fuse"
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},
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{
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"name": "cd_fuse",
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"type": "fusion",
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"module": "hypertower_core.components.bridges.mono_bridge",
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"class": "MonoBridge",
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"inputs": [
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"cd"
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],
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"level": "sample",
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"epochs": 10,
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"train_towers": true,
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"args": {
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"use_ln": false
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}
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}
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],
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"training": {
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"lr": 0.001,
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"batch_size": 32,
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"tune_binary_threshold": true
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},
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"data_bundles": [
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{
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"file": "smoke.hdb",
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"encrypted": false,
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"mount": "bundled",
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"unpacked_mb": 1,
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"sha256": "b01dbf19fe3639a1b75fb80d75b31158f78dc42bec3767fe1caf94afd5b8fda5"
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}
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],
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"dataset": {
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"n_samples": 400
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}
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} |