ryan
4e815df327
400 rows / 200 patients, two samples each, so grouped splitting is actually exercised. Signal is modest and noisy on purpose — a separable toy would score 1.0 with a broken model and prove nothing.
53 lines
1.6 KiB
JSON
53 lines
1.6 KiB
JSON
{
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"_notes": [
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"Smoke test for the repo-backed job flow: tabular-only binary classification.",
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"metadata_csv is relative to the repo root, which is the provider's working",
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"directory when a job carries repo+ref. Deliberately small and short — this",
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"exists to prove the path works end to end, not to produce a good model."
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],
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"run_name": "tabular_smoke",
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"num_classes": 2,
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"split_identity_level": 1,
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"eval_stage": "cd_fuse",
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"save_predictions": true,
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"seed": 1234,
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"folds": 3,
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"fold_seed": 100,
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"output_root": "results",
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"data": {
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"module": "hypertower_core.profiles.generic",
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"args": {
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"metadata_csv": "data/smoke/labels.csv",
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"id_column": "sample_id",
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"label_col": "diagnosis",
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"target_type": "classification",
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"group_column": "patient_id",
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"cat_cols": ["site"],
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"exclude_cols": ["notes"]
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}
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},
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"towers": [
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{
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"name": "cd",
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"module": "hypertower_core.components.towers.clinical_tower",
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"class": "ClinicalEncoder",
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"data_source": "matrix",
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"args": { "hidden_dim": 64 }
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}
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],
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"stages": [
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{ "name": "cd_warm", "type": "warm", "tower": "cd", "head_name": "cd_aux",
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"level": "sample", "epochs": 8 },
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{ "name": "cd_aux", "type": "head", "input": "cd", "train_with": "cd_fuse" },
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{ "name": "cd_fuse", "type": "fusion",
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"module": "hypertower_core.components.bridges.mono_bridge",
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"class": "MonoBridge", "inputs": ["cd"], "level": "sample",
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"epochs": 10, "train_towers": true, "args": { "use_ln": false } }
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],
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"training": { "lr": 1e-3, "batch_size": 32, "tune_binary_threshold": true }
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}
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