a721e52909
- Introduced `poster_model_comparison.py` for generating model comparison figures. - Added `plot_poster_roc_comparison.py` for creating ROC comparison figures for PAPILA binary classification. - Created new JSON configuration files for clinical solo models with and without geometry injection. - Implemented batch dispatch updates in `batch_dispatch.py` to utilize run names from configurations. - Added analysis scripts: `compare_grid.py`, `inspect_embeddings.py`, and `summarize_run.py` for evaluating model performance and feature embeddings. - Created experiment configurations for various training scenarios, including warm sweeps and promoting successful runs. - Added binary ROC comparison and model comparison figures to the results directory.
133 lines
4.7 KiB
Python
133 lines
4.7 KiB
Python
"""summarize_run — print cross-rep stats for one v4 run folder.
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A "run" is a folder like ``v4/results/experiments/tri_v1/grid/bcd75_cw1_nt25/``
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containing ``rep00/``, ``rep01/``, ... — each with a per-rep ``summary.json``
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under any ``out_dir_tags`` subdir (typically ``binary/`` or ``binary/ntower/``).
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Usage:
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python -m v4.scripts.analysis.summarize_run <run_folder> [--per-rep] [--json]
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Examples:
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python -m v4.scripts.analysis.summarize_run \
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v4/results/experiments/tri_v1/grid/bcd75_cw1_nt25
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python -m v4.scripts.analysis.summarize_run \
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v4/results/experiments/tri_v1/baseline_tri --per-rep
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"""
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from __future__ import annotations
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import argparse
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import json
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import re
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from pathlib import Path
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import numpy as np
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def find_rep_summaries(run_dir: Path) -> list[tuple[int, Path]]:
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"""Return [(rep_idx, summary_path), ...] sorted by rep_idx."""
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out: list[tuple[int, Path]] = []
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for rep_dir in sorted(run_dir.glob("rep*")):
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if not rep_dir.is_dir():
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continue
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m = re.match(r"rep(\d+)$", rep_dir.name)
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if not m:
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continue
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summary = next(iter(rep_dir.rglob("summary.json")), None)
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if summary is not None:
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out.append((int(m.group(1)), summary))
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return out
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def load_rep(summary_path: Path) -> dict:
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"""Extract the fields we summarise from one rep's summary.json."""
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d = json.loads(summary_path.read_text())
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return {
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"val_mean": float(d.get("mean_val_auc", float("nan"))),
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"val_std": float(d.get("std_val_auc", float("nan"))),
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"test_mean": float(d.get("mean_test_auc", float("nan"))),
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"test_std": float(d.get("std_test_auc", float("nan"))),
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"elapsed_s": float(d.get("elapsed_s", float("nan"))),
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"eval_stage": d.get("eval_stage", "?"),
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}
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def summarise(run_dir: Path) -> dict:
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reps = find_rep_summaries(run_dir)
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if not reps:
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return {"run": str(run_dir), "n_reps": 0, "reps": []}
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rows = [(idx, load_rep(p)) for idx, p in reps]
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val = np.array([r[1]["val_mean"] for r in rows])
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test = np.array([r[1]["test_mean"] for r in rows])
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elaps = np.array([r[1]["elapsed_s"] for r in rows])
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out = {
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"run": str(run_dir),
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"n_reps": len(rows),
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"eval_stage": rows[0][1]["eval_stage"],
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"val_mean": float(np.mean(val)),
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"val_std": float(np.std(val)),
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"val_min": float(np.min(val)),
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"val_max": float(np.max(val)),
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"test_mean": float(np.mean(test)),
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"test_std": float(np.std(test)),
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"test_min": float(np.min(test)),
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"test_max": float(np.max(test)),
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"elapsed_total_s": float(np.sum(elaps)) if not np.isnan(elaps).any() else None,
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"reps": [
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{"rep": idx, **info} for idx, info in rows
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],
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}
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return out
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def render(s: dict, per_rep: bool = False) -> str:
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if s["n_reps"] == 0:
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return f"Run: {s['run']}\n no reps with summary.json found."
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lines = [
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f"Run: {s['run']}",
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f"Reps: {s['n_reps']} (eval_stage={s['eval_stage']})",
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f"Val AUC: {s['val_mean']:.4f} ± {s['val_std']:.4f} "
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f"[min={s['val_min']:.4f} max={s['val_max']:.4f}]",
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f"Test AUC: {s['test_mean']:.4f} ± {s['test_std']:.4f} "
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f"[min={s['test_min']:.4f} max={s['test_max']:.4f}]",
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]
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if s.get("elapsed_total_s") is not None:
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h = s["elapsed_total_s"] / 3600
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lines.append(f"Compute: {s['elapsed_total_s']:.0f} s total ({h:.1f} h)")
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if per_rep:
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lines.append("")
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lines.append("Per-rep breakdown:")
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lines.append(f" {'rep':>4s} {'val':>7s} {'test':>7s} {'elapsed':>7s}")
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for r in s["reps"]:
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elapsed = (f"{r['elapsed_s']:.0f}s" if not np.isnan(r['elapsed_s']) else "-")
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lines.append(
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f" {r['rep']:>4d} "
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f"{r['val_mean']:>7.4f} "
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f"{r['test_mean']:>7.4f} "
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f"{elapsed:>7s}"
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)
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return "\n".join(lines)
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def main():
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ap = argparse.ArgumentParser(description=__doc__,
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formatter_class=argparse.RawDescriptionHelpFormatter)
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ap.add_argument("run_dir", type=Path, help="Path to a run folder (contains repNN/ subdirs)")
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ap.add_argument("--per-rep", action="store_true", help="Print one line per rep")
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ap.add_argument("--json", action="store_true", help="Emit JSON instead of formatted text")
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args = ap.parse_args()
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if not args.run_dir.is_dir():
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raise SystemExit(f"Not a directory: {args.run_dir}")
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s = summarise(args.run_dir)
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if args.json:
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print(json.dumps(s, indent=2))
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else:
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print(render(s, per_rep=args.per_rep))
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if __name__ == "__main__":
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main()
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